Description: This directory contains the presentations and MATLAB codes for the 2017 NIMBios Tutorial on Uncertainty Quantification for Biological  Models.

Data Files: The DRAM code can be downloaded from the websites
                                 https://wiki.helsinki.fi/display/inverse/Adaptive+MCMC
                          or
                                 http://helios.fmi.fi/~lainema/mcmc/

Zipped version of the DRAM code: MCMC_STAT.zip

Presentations:
          NIMBios_Intro.pdf
          NIMBios_Parameter_Reduction.pdf
          NIMBioS_Bayesian_Inference.pdf
          NIMBios_Propagation.pdf

MATLAB Files for Aliasing:  See also the file Example6_11
          alias.m

MATLAB Files for Surrogate Model Construction
         RESPONSE_SURFACE.zip
  or
         response_surface.m
         polyfitn.m
         polyn2sym.m
         polydern.m
         polyn2sympoly.m
         polyvaln.m

MATLAB Files for 4-Parameter SIR Model:
        SIR_dram.m
        SIR_rhs.m
        SIR_fun.m
        SIRss.m
        mcmcpredplot_custom.m

Data Files:
        SIR_data.mat

MATLAB files for Sampling-Based Propagation
        rand_points.m
        pi_approx.m